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Dependencies
- dask >=2022.3.0
- gurobipy <13.0.0,>12.0.1
- h5py >=3.9.0
- matplotlib >=3.10.8
- numpy >=1.24.0
- polars >=1.0.0
- pooch >=1.7.0
- pydantic >=2.12.5
- pyyaml >=6.0.3
- rich >=14.3.1
- scikit-image >=0.21.0
- scipy >=1.11.0
- spatial-graph >=0.0.5
- tifffile >=2023.1.0
- toolz >=0.11.0
- torch >=2.0.0
- tracksdata >=0.1.0rc4
- typer >=0.21.1
- zarr >=3.0
10 optional dependencies
- bioio[bioio]
- bioio[dev]
- bioio-tifffile[bioio]
- bioio-tifffile[dev]
- pre-commit[dev]
- pytest[dev]
- pytest-cov[dev]
- ruff[dev]
- scikit-learn[dev]
- scikit-learn[correction]