Downloads in the 30 and 7 days to October 10, 2026. Refreshed weekly.
Package Information
No reported malware or high/critical advisories · Details
The current version has no OSV.dev malware reports and no critical or high-severity vulnerabilities.
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Dependencies
- bagit <2,>=1.9
- biopython <2,>=1.85
- bioregistry <1,>=0.14
- diskcache <6,>=5.6
- duckdb <2,>=1.5
- fastapi <1,>=0.115
- filelock <4,>=3.16
- frictionless <6,>=5.18
- geoparse <3,>=2.0
- httpx <1,>=0.28
- huey <3,>=2.5
- joblib <2,>=1.4
- linkml-map ==0.5.4
- numpy <3,>=2.1
- oaklib <1,>=0.6
- packaging <27,>=24
- pandas <3,>=2.2
- pint <1,>=0.24
- pooch <2,>=1.9
- pydantic <3,>=2.12
- pyyaml <7,>=6.0
- rapidfuzz <4,>=3.10
- scikit-learn <2,>=1.5
- scipy <2,>=1.14
- sse-starlette <4,>=3.5
- sssom <1,>=0.4
- uvicorn <1,>=0.34
41 optional dependencies
-
biopython<2,>=1.85[reconcile]extra == "reconcile"
-
bioregistry<1,>=0.14[ontology]extra == "ontology"
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diskcache<6,>=5.6[cohort]extra == "cohort"
-
duckdb<2,>=1.5[cohort]extra == "cohort"
-
fastapi<1,>=0.115[server]extra == "server"
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fastapi<1,>=0.115[cohort]extra == "cohort"
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frictionless<6,>=5.18[cohort]extra == "cohort"
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frictionless<6,>=5.18[reconcile]extra == "reconcile"
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geoparse<3,>=2.0[geo-verify]extra == "geo-verify"
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httpx<1,>=0.28[reconcile]extra == "reconcile"
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httpx<1,>=0.28[cohort]extra == "cohort"
-
huey<3,>=2.5[cohort]extra == "cohort"
-
huggingface-hub<1,>=0.28[learned]extra == "learned"
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joblib<2,>=1.4[cohort]extra == "cohort"
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joblib<2,>=1.4[reconcile]extra == "reconcile"
-
linkml-map==0.5.4[transform]extra == "transform"
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linkml-map==0.5.4[cohort]extra == "cohort"
-
numpy<3,>=2.1[cohort]extra == "cohort"
-
numpy<3,>=2.1[reconcile]extra == "reconcile"
-
oaklib<1,>=0.6[ontology]extra == "ontology"
-
packaging<27,>=24[cohort]extra == "cohort"
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packaging<27,>=24[reconcile]extra == "reconcile"
-
pandas<3,>=2.2[geo-verify]extra == "geo-verify"
-
pint<1,>=0.24[reconcile]extra == "reconcile"
-
pint<1,>=0.24[cohort]extra == "cohort"
-
pooch<2,>=1.9[cohort]extra == "cohort"
-
pooch<2,>=1.9[reconcile]extra == "reconcile"
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pooch<2,>=1.9[ontology]extra == "ontology"
-
rapidfuzz<4,>=3.10[cohort]extra == "cohort"
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rapidfuzz<4,>=3.10[reconcile]extra == "reconcile"
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scikit-learn<2,>=1.5[cohort]extra == "cohort"
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scikit-learn<2,>=1.5[reconcile]extra == "reconcile"
-
scipy<2,>=1.14[reconcile]extra == "reconcile"
-
scipy<2,>=1.14[cohort]extra == "cohort"
-
sse-starlette<4,>=3.5[server]extra == "server"
-
sse-starlette<4,>=3.5[cohort]extra == "cohort"
-
sssom<1,>=0.4[ontology]extra == "ontology"
-
torch<3,>=2.6[learned]extra == "learned"
-
transformers<5,>=4.48[learned]extra == "learned"
-
uvicorn<1,>=0.34[cohort]extra == "cohort"
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uvicorn<1,>=0.34[server]extra == "server"