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Dependencies
- aicsimageio ==4.14.0
- aicspylibczi
- albumentations ==2.0.5
- brainglobe-atlasapi
- click
- dacite
- datasets
- fsspec
- huggingface-hub
- importlib-resources
- itk-elastix
- jpype1 ==1.5.0
- jsonargparse <5.0.0,>=4.0.0
- kornia
- lightning
- napari >=0.5.0
- natsort
- networkx
- numpy <2.0.0
- opencv-contrib-python-headless
- opencv-python-headless
- openpyxl
- pandas
- paquo
- qtpy
- scikit-image
- scikit-learn
- scikit-posthocs
- scyjava
- stardist
- statsmodels
- tensorflow <2.20
- timm <2.0.0,>=1.0.0
- toml
- torch
- torchvision
- tqdm
9 optional dependencies
-
pre-commit[dev]extra == "dev"
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py[testing]extra == "testing"
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pyqt5[testing]extra == "testing"
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pytest[testing]extra == "testing"
-
pytest-cov[testing]extra == "testing"
-
pytest-mock[testing]extra == "testing"
-
pytest-qt<4.1.0[testing]extra == "testing"
-
scipy-stubs[dev]extra == "dev"
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tox[testing]extra == "testing"