Downloads in the 30 and 7 days to October 10, 2026. Refreshed weekly.
Package Information
No reported malware or high/critical advisories · Details
The current version has no OSV.dev malware reports and no critical or high-severity vulnerabilities.
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Dependencies
- absl-py >=0.13.0
- alphapulldown-input-parser >=0.5.2
- appdirs >=1.4.4
- biopython <1.82,>=1.81
- dm-haiku
- dm-tree >=0.1.6
- h5py >=3.1.0
- immutabledict >=2.0.0
- importlib-metadata <5.0.0,>=4.8.2
- importlib-resources >=6.1.0
- ipython ==8.16.1
- ipywidgets
- jupyterlab >=3.0
- matplotlib >=3.3.3
- ml-collections >=0.1.0
- ml-dtypes
- nbformat >=5.9.2
- pandas >=1.5.3
- py3dmol ==2.0.4
- tensorflow-cpu ==2.20.0
- tqdm >=4.66.1
- typing-extensions >=4.15.0
21 optional dependencies
-
colabfold-kernels<0.5,>=0.4.0[fast-kernels]extra == "fast-kernels"
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coverage>=7.10[test]extra == "test"
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dm-haiku==0.0.16[alphafold3]extra == "alphafold3"
-
jax==0.10.2[alphafold3]extra == "alphafold3"
-
jax==0.5.3[alphafold2]extra == "alphafold2"
-
modelcif>=1.6[alphafold2]extra == "alphafold2"
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modelcif>=1.6[alphafold3]extra == "alphafold3"
-
numpy<2[alphafold2]extra == "alphafold2"
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numpy[alphafold3]extra == "alphafold3"
-
openmm>=8.2[alphafold2]extra == "alphafold2"
-
openmm>=8.2[alphafold3]extra == "alphafold3"
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parameterized[test]extra == "test"
-
pdbfixer>=1.10[alphafold3]extra == "alphafold3"
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pdbfixer>=1.10[alphafold2]extra == "alphafold2"
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pytest>=8.0[test]extra == "test"
-
pytest-cov>=5.0[test]extra == "test"
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pytest-timeout>=2.3[test]extra == "test"
-
pytest-xdist>=3.6[test]extra == "test"
-
rdkit==2025.9.4[alphafold3]extra == "alphafold3"
-
tokamax==0.0.12[alphafold3]extra == "alphafold3"
-
zstandard[alphafold3]extra == "alphafold3"
Used By
- ppifold 3.5K/mo
- fast-hint-ppi 2.3K/mo